.. _api:

.. note::
   We have reproduced API documentation from the `gufe`_ package here for convenience.
   `gufe`_ serves as a foundation layer for openfe, providing abstract base classes and object models, and so might be more useful for developers.

OpenFE API Reference
====================

.. toctree::
    :maxdepth: 2

    systems_and_components
    atom_mappers
    ligand_network
    alchemical_network_planning
    defining_and_executing_simulations
    openmm_rfe
    openmm_solvation_afe
    openmm_md
    openmm_protocol_settings

.. _gufe: https://gufe.readthedocs.io/en/latest/api.html