Reference
=========

This contains details of the Python API as well as a reference to the
command line interface.

.. note::
   We have reproduced API documentation from the `gufe`_ package here for convenience.
   `gufe`_ serves as a foundation layer for openfe, providing abstract base classes and object models, and so might be more useful for developers.

.. toctree::
    :maxdepth: 2

    api/index
    cli/index

.. _gufe: https://gufe.readthedocs.io/en/latest/api.html