OpenFE has several tutorial notebooks which are maintained on our Example Notebooks repository. For new users, we recommend the following two:

Relative Free Energies CLI tutorial#

The Relative Free Energies with the OpenFE CLI tutorial walks users through how to use the OpenFE command line to calculate relative binding free energies of various ligands against the TYK2 target.

Associated with it is also a notebook for how to achieve the same outcomes using the Python API.

Python API Showcase#

Our showcase notebook walks users through how to use the main components of OpenFE to create a relative binding free energy calculation.