Index Symbols | L | O | S | T Symbols --mapper openfe-plan-rbfe-network command line option openfe-plan-rhfe-network command line option --mol-dir openfe-plan-rbfe-network command line option openfe-plan-rhfe-network command line option --output-dir openfe-plan-rbfe-network command line option openfe-plan-rhfe-network command line option --protein openfe-plan-rbfe-network command line option --work-dir openfe-quickrun command line option -d openfe-quickrun command line option -M openfe-plan-rbfe-network command line option openfe-plan-rhfe-network command line option -o openfe-plan-rbfe-network command line option openfe-plan-rhfe-network command line option openfe-quickrun command line option -p openfe-plan-rbfe-network command line option L LigandAtomMapper (class in openfe.setup.atom_mapping) LigandAtomMapping (class in openfe) LigandNetwork (class in openfe) O openfe-plan-rbfe-network command line option --mapper --mol-dir --output-dir --protein -M -o -p openfe-plan-rhfe-network command line option --mapper --mol-dir --output-dir -M -o openfe-quickrun command line option --work-dir -d -o TRANSFORMATION S SmallMoleculeComponent (class in openfe) T TRANSFORMATION openfe-quickrun command line option